Algorithm Design Laboratory with Applications
Schedule
- Monday 10:30 - 13:30. Room A1.2.
- Thursday 9:30 - 11:30. Room A1.2.
Office hours: Thursday 14:30 - 16:30. Please send me an email or ask before/after the lectures.
Lectures and Material
Introduction and Prefix Sums
Course overview.
Introduction to laboratory exercises: exercises format, writing, compiling, evaluating, and debugging a solution. Programming tips, assertions.
The STL library: overview, basic types, containers (arrays, vectors, deques, queues, stacks, (muti-)sets, priority queues), iterators, algorithms: (heaps and sorting, linear search, binary search, deleting and replacing elements).
The prefix sums technique. Counting the number of contiguous subsequences with even total sum: cubic-, quadratic-, and linear-time solutions.
Material
- Slides: introduction to laboratory excercises.
- Documentation of the Standard Template Library.
- Slides: the STL library.
- Slides: prefix_sums.
Sorting, Binary Searching, and Sliding Window
Sorting and binary searching with predicates. Computing good upper bounds using exponential search.
The sliding window technique. Examples with cubic-, quadratic-, almost linear-, and linear-time solutions.
Material
Greedy algorithms
Greedy algorithms. Interval scheduling: problem definition, the earliest finish time algorithm, proof of correctness (greedy stays ahead).
Interval partitioning: problem definition, greedy algorithm, proof of correctness (using structural properties).
Scheduling jobs with deadlines to minimize lateness. The Earliest Deadline First algorithm. Proof of correctness through an exchange argument.
Material
- Sections 4.1 and 4.2 of [KT].
- Section 6.1 of [CLRS].
- Slides: greedy algorithms.
Divide and Conquer, Memoization, and Dynamic Programming
The divide and conquer technique and the polynomial multiplication problem.
Recursion and memoization: computing Fibonacci numbers recursively in linear-time.
Introduction to dynamic programming. A trivial example: computing Fibonacci numbers iteratively. The Longest Increasing Subsequence problem: a O(n^2)-time algorithm.
The segmented least squares problem: a dynamic programming algorithm running in time O(n^2).
Material
- Section 5.5 of [KT], where the divide and conquer technique is applied to integer multiplication.
- Section 3.1 of [E] discusses memoization and dynamic programming and applies these techniques to the problem of computing the n-th Fibonacci number.
- Sections 6.1 and 6.2 of [KT], where memoization and dynamic programming are applied to the weighted interval scheduling problem.
- Sections 6.3 of [KT], where dynamic programming is used to solve the segmented least squares problem in time O(n^3).
- Section 3.7 of [E] shows how to solve the longest increasing subsequnce problem in O(n^2) time using dynamic programming.
- Section 2 of M. L. Fredman, On computing the length of longest increasing subsequences provides an algorithm with a running time of O(n log n).
- Slides: divide and conquer, memoization, dynamic programming.
- Slides: segmented least squares.
More Dynamic Programming
Maximum-weight independent set on paths (linear-time algorithm), Maximum-weight independent set on trees (linear-time algorithm), Maximum weight independent set on trees with cardinality constraints. Counting the number of ways to distribute budget with stars and bars. Dynamic programming algorithm to optimally distribute budget.
The minimum edit distance problem: definition, quadratic algorithm, techniques for reconstructing optimal solutions from the dynamic programming table.
The Knapsack problem: a dynamic programming algorithm with polynomial running time in the number of items and in the maximum weight. A dynamic programming algorithm with polynomial running time in the number of items and in the optimal value.
Material
- Exercise 1 and Solved Exercise 1 in Chapter 6 of [KT].
- Excercise 15-6 of [CLRS] and section "Maximum-Weight Independent Set on Trees" in Chapter 10.2 of [KT].
- Chapter 3.7 of [E].
- Chapter 6.4 of [KT]
- Slides: Independent Set and Edit Distance.
- Slides: Knapsack.
The Split and List Technique, the 2-SAT problem
The Subset-Sum problem: definition and a dynamic programming algorithm. Pseudopolynomial-time algorithms. The split and list technique: Improving the trivial O*(2^n)-time algorithm for subset-sum to a O*(2^(n/2))-time algorithm. Techniques for generating all subsets sums of a set, a trivial O(n2^n) algorithm, a O(2^n) algorithm.
A split and list algorithm for the Knapsack problem.
The 1-in-3 Positive SAT problem: definition, improving the trivial O*(2^n)-time algorithm to a O*(2^(n/2))-time split and list algorithm.
The 2-SAT problem: the implication graph, strongly connected components, and topological sorting. Relation between strongly connected components and 2-SAT.
Material
- Chapter 3.8 of [E].
- Chapter 6.4 of [KT].
- Chapter 17.1 of [CLRS].
- Chapter 9.1 of [F].
- Slides: Subset Sum and Split and List.
- Slides: Solving 2-SAT via strongly connected components.
Tarjan's algorithm for SCCs. Introduciton to the Boost Graph Library
Tarjan's algorithm for computing Strongly Connected Components, proof of correctness and analysis of its running time.
The Boost Graph Library: fundamentals, graph representations, vertex and edge descriptors, iterators, internal property maps, external property maps.
Algorithms in BGL: topological sorting, connected components, strongly connected components, named parameters, solving 2-SAT with BGL, single source distances (in DAGS, using Dijkstra algorithm, using Bellman-Ford algorithm), all to all distances (Floyd-Warshall algorithm), minimum spanning trees (using Kruskal algorithm, using Prim algorithm).
Visits in BGL: the BFS visitor, the DFS visitor.
Material
- Chapter 12.5.2 of [DFI] or Chapter 6 of [E].
- Slides: Tarjan's algorithm for computing SCCs.
- Slides: the Boost Graph Library.
- Official documentation of the Boost Graph Library.
- Useful code snippets using the Boost Graph Library.
Applications of Network Flows
The maximum flow problem: definition, linear programming formulation, augmenting paths and residual graphs. Flow algorithms (without analysis): Ford-Fulkerson, Edmonds-Karp, and Push-Relabel. Handing multiple sources, vertex capacities, undirected graphs, and minimum capacities.
Network flow in BGL: graph representation, invoking Edmonds-Karp and Push-Relabel.
Flow applications: the minimum s-t cut problem and the max-flow min-cut theorem. Finding the maximum number of edge-disjoint paths, the circulation problem, the maximum bipartite matching problem and Kőnig's theorem, image segmentation.
Min-cost max-flow and applications. Minimum-cost bipartite matching. Min-cost max-flow in BGL: using the Cycle Canceling algorithm, and the Successive Shortest Paths algorithm.
Material
- Chapters 7.1 and 7.2 of [KT].
- Chapter 21 of [CLRS].
- Chapter 11 of [E] for the discussed applications and more.
- The interested students can find a description of the flow algorithms in Chapter 10 of [E] and in Chapters F and G of the "Extended Dance Remix" of [E].
- Slides: network flows.
- Useful code snippets for flow algorithms using the Boost Graph Library.
Laboratory Problems
The online judge is accessible at https://judge.stefanoleucci.com.
- Asteroid mining: statement, test-cases.
- Number station: statement, test-cases.
- A massive bookwork: statement, test-cases.
- Travelling salesman: statement, test-cases.
- Mountain trip: statement, test-cases.
- Postal service: statement, test-cases.
- Lazy hikers: statement, test-cases.
- HDMI cables: statement, test-cases.
- Two trees: statement, test-cases.
- Tunnel: statement, test-cases.
- Souvenirs: statement, test-cases.
- Deep sea research: statement, test-cases.
- Omicron persei 8: statement, test-cases.
- Candies: statement, test-cases.
- Switches: statement, test-cases.
- Sliding token: statement, test-cases.
- Book printing: statement, test-cases.
- Metro: statement, test-cases.
- Bookshelf: statement, test-cases.
- Che$$board: statement, test-cases.
References
- [CLRS]: Thomas H. Cormen, Charles E. Leiserson, Ronald L. Rivest, Clifford Stein. Introduction to Algorithms (3rd Edition). MIT Press. ISBN 978-0-262-53305-8.
- [KT]: Jon Kleinberg, Éva Tardos. Algorithm Design. Pearson. ISBN 0-321-29535-8.
- [DFI] Camil Demetrescu, Irene Finocchi, Giuseppe F. Italiano. Algoritmi e Strutture Dati (seconda edizione). McGraw-Hill. ISBN: 978-8838664687.
- [E]: Jeff Erickson. Algorithms. 978-1-792-64483-2. Freely available under the Creative Commons Attribution 4.0 International License at the book website.
- [F]: Fedor V. Fomin, Dieter Kratsch. Exact Exponential Algorithms. Springer. ISBN 978-3-642-16533-7. Freely available for personal use here.